HL_9CN3_014

3D structure

PDB id

9CN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 39S mitoribosome in complex with antibiotic Linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

9CN3|1|A|A|2181

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CN3_014 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.208

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9CN3|1|A|C|2175
9CN3|1|A|C|2176
9CN3|1|A|U|2177
9CN3|1|A|A|2178
9CN3|1|A|A|2179
9CN3|1|A|A|2180
9CN3|1|A|A|2181
9CN3|1|A|G|2182
9CN3|1|A|C|2183
9CN3|1|A|A|2184
9CN3|1|A|G|2185

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial