HL_9CPA_004

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

9CPA|1|2|U|9

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_004 not in the Motif Atlas

Geometric match to HL_8CRE_191

Geometric discrepancy: 0.0881

The information below is about HL_8CRE_191

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31940.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9CPA|1|2|G|7
9CPA|1|2|U|8
9CPA|1|2|U|9
9CPA|1|2|G|10
9CPA|1|2|A|11
9CPA|1|2|U|12
9CPA|1|2|C|13
9CPA|1|2|C|14
9CPA|1|2|U|15
9CPA|1|2|G|16
9CPA|1|2|C|17

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain Z

uS12