9CPA Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9CPA_001 | No text annotation | ||
| HL_9CPA_002 | tRNA anticodon loop | ||
| HL_9CPA_003 | T-loop with 2 stacked bulged bases | ||
| HL_9CPA_004 | No text annotation | ||
| HL_9CPA_005 | No text annotation | ||
| HL_9CPA_006 | GNRA related | ||
| HL_9CPA_007 | No text annotation | ||
| HL_9CPA_008 | No text annotation | ||
| HL_9CPA_009 | T-loop with 1 bulged base | ||
| HL_9CPA_010 | No text annotation | ||
| HL_9CPA_011 | No text annotation | ||
| HL_9CPA_012 | GNRA variation | ||
| HL_9CPA_013 | No text annotation | ||
| HL_9CPA_014 | UNCG | ||
| HL_9CPA_015 | No text annotation | ||
| HL_9CPA_016 | tRNA anticodon loop | ||
| HL_9CPA_017 | No text annotation | ||
| HL_9CPA_018 | No text annotation | ||
| HL_9CPA_019 | T-loop related | ||
| HL_9CPA_020 | No text annotation | ||
| HL_9CPA_021 | No text annotation | ||
| HL_9CPA_022 | No text annotation | ||
| HL_9CPA_023 | No text annotation | ||
| HL_9CPA_024 | No text annotation | ||
| HL_9CPA_025 | GNRA | ||
| HL_9CPA_026 | No text annotation | ||
| HL_9CPA_027 | No text annotation | ||
| HL_9CPA_028 | GNRA | ||
| HL_9CPA_029 | GNRA | ||
| HL_9CPA_030 | No text annotation | ||
| HL_9CPA_031 | GNRA wlth extra near cWW | ||
| HL_9CPA_032 | GNRA | ||
| HL_9CPA_033 | T-loop related | ||
| HL_9CPA_034 | No text annotation | ||
| HL_9CPA_035 | No text annotation | ||
| HL_9CPA_036 | GNRA | ||
| HL_9CPA_037 | No text annotation | ||
| HL_9CPA_038 | No text annotation | ||
| HL_9CPA_039 | No text annotation | ||
| HL_9CPA_040 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9CPA_001 | Isolated non-canonical cWW pair | ||
| IL_9CPA_002 | Isolated non-canonical cWW pair | ||
| IL_9CPA_003 | Double sheared | ||
| IL_9CPA_004 | No text annotation | ||
| IL_9CPA_005 | Minor groove platform | ||
| IL_9CPA_006 | No text annotation | ||
| IL_9CPA_007 | No text annotation | ||
| IL_9CPA_008 | Triple non-canonical cWW pairs | ||
| IL_9CPA_009 | Multiple bulged bases | ||
| IL_9CPA_010 | No text annotation | ||
| IL_9CPA_011 | No text annotation | ||
| IL_9CPA_012 | Isolated cWH basepair | ||
| IL_9CPA_013 | Double sheared with non-canonical cWW | ||
| IL_9CPA_014 | Isolated non-canonical cWW pair | ||
| IL_9CPA_015 | No text annotation | ||
| IL_9CPA_016 | Isolated non-canonical cWW pair | ||
| IL_9CPA_017 | Tandem non-canonical cWW pairs | ||
| IL_9CPA_018 | Single bulged A | ||
| IL_9CPA_019 | Isolated non-canonical cWW pair | ||
| IL_9CPA_020 | Kink-turn with non-sequential stacking | ||
| IL_9CPA_021 | No text annotation | ||
| IL_9CPA_022 | No text annotation | ||
| IL_9CPA_023 | Isolated cWH basepair | ||
| IL_9CPA_024 | Isolated non-canonical cWW pair | ||
| IL_9CPA_025 | Single bulged U | ||
| IL_9CPA_026 | No text annotation | ||
| IL_9CPA_027 | No text annotation | ||
| IL_9CPA_028 | No text annotation | ||
| IL_9CPA_029 | No text annotation | ||
| IL_9CPA_030 | Tandem non-canonical cWW pairs | ||
| IL_9CPA_031 | SSU/LSU pseudoknot | ||
| IL_9CPA_032 | Single bulged U | ||
| IL_9CPA_033 | No text annotation | ||
| IL_9CPA_034 | Isolated non-canonical cWW pair | ||
| IL_9CPA_035 | No text annotation | ||
| IL_9CPA_036 | Isolated non-canonical cWW pair | ||
| IL_9CPA_037 | tSH-tHW-tHS | ||
| IL_9CPA_038 | No text annotation | ||
| IL_9CPA_039 | Single bulged C | ||
| IL_9CPA_040 | No text annotation | ||
| IL_9CPA_041 | No text annotation | ||
| IL_9CPA_042 | No text annotation | ||
| IL_9CPA_043 | No text annotation | ||
| IL_9CPA_044 | Isolated non-canonical cWW pair | ||
| IL_9CPA_045 | No text annotation | ||
| IL_9CPA_046 | No text annotation | ||
| IL_9CPA_047 | Single stack bend | ||
| IL_9CPA_048 | No text annotation | ||
| IL_9CPA_049 | Major groove platform; stack outside cWW | ||
| IL_9CPA_050 | Single bulged U | ||
| IL_9CPA_051 | Tandem non-canonical cWW pairs | ||
| IL_9CPA_052 | Tandem non-canonical cWW pairs | ||
| IL_9CPA_053 | Tandem non-canonical cWW pairs | ||
| IL_9CPA_054 | Kink-turn | ||
| IL_9CPA_055 | No text annotation | ||
| IL_9CPA_056 | tSH-tHW-tHS | ||
| IL_9CPA_057 | No text annotation | ||
| IL_9CPA_058 | No text annotation | ||
| IL_9CPA_059 | Minor groove platform | ||
| IL_9CPA_060 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_9CPA_061 | Single bulged A | ||
| IL_9CPA_062 | Single bulged G | ||
| IL_9CPA_063 | C-loop | ||
| IL_9CPA_064 | Isolated non-canonical cWW pair | ||
| IL_9CPA_065 | Minor groove platform | ||
| IL_9CPA_066 | Intercalated cWW | ||
| IL_9CPA_067 | No text annotation | ||
| IL_9CPA_068 | No text annotation | ||
| IL_9CPA_069 | No text annotation | ||
| IL_9CPA_070 | No text annotation | ||
| IL_9CPA_071 | No text annotation | ||
| IL_9CPA_072 | Isolated cWS basepair | ||
| IL_9CPA_073 | No text annotation | ||
| IL_9CPA_074 | No text annotation | ||
| IL_9CPA_075 | Single bulged A | ||
| IL_9CPA_076 | Isolated non-canonical cWW pair | ||
| IL_9CPA_077 | Minor groove platform | ||
| IL_9CPA_078 | Tandem non-canonical cWW pairs | ||
| IL_9CPA_079 | No text annotation | ||
| IL_9CPA_080 | No text annotation | ||
| IL_9CPA_081 | No text annotation | ||
| IL_9CPA_082 | No text annotation | ||
| IL_9CPA_083 | No text annotation | ||
| IL_9CPA_084 | Isolated non-canonical cWW pair | ||
| IL_9CPA_085 | No text annotation | ||
| IL_9CPA_086 | No text annotation | ||
| IL_9CPA_087 | Isolated non-canonical cWW pair | ||
| IL_9CPA_088 | No text annotation | ||
| IL_9CPA_089 | No text annotation | ||
| IL_9CPA_090 | No text annotation | ||
| IL_9CPA_091 | Isolated non-canonical cWW pair | ||
| IL_9CPA_092 | No text annotation | ||
| IL_9CPA_093 | Isolated non-canonical cWW pair | ||
| IL_9CPA_094 | Double sheared | ||
| IL_9CPA_095 | No text annotation | ||
| IL_9CPA_096 | Isolated non-canonical cWW pair | ||
| IL_9CPA_097 | Double sheared | ||
| IL_9CPA_098 | Isolated non-canonical cWW pair | ||
| IL_9CPA_099 | Triple sheared | ||
| IL_9CPA_100 | No text annotation | ||
| IL_9CPA_101 | Single stack bend | ||
| IL_9CPA_102 | Single stack bend | ||
| IL_9CPA_103 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9CPA_001 | No text annotation | ||
| J3_9CPA_002 | No text annotation | ||
| J3_9CPA_003 | No text annotation | ||
| J3_9CPA_004 | No text annotation | ||
| J3_9CPA_005 | No text annotation | ||
| J3_9CPA_006 | No text annotation | ||
| J3_9CPA_007 | No text annotation | ||
| J3_9CPA_008 | No text annotation | ||
| J3_9CPA_009 | No text annotation | ||
| J3_9CPA_010 | No text annotation | ||
| J3_9CPA_011 | No text annotation | ||
| J3_9CPA_012 | No text annotation | ||
| J3_9CPA_013 | No text annotation | ||
| J3_9CPA_014 | No text annotation | ||
| J3_9CPA_015 | No text annotation | ||
| J4_9CPA_001 | No text annotation | ||
| J4_9CPA_002 | No text annotation | ||
| J4_9CPA_003 | No text annotation | ||
| J5_9CPA_001 | No text annotation | ||
| J5_9CPA_002 | No text annotation | ||
| J5_9CPA_003 | No text annotation | ||
| J5_9CPA_004 | No text annotation | ||
| J5_9CPA_005 | No text annotation | ||
| J6_9CPA_001 | No text annotation | ||
| J6_9CPA_002 | No text annotation |
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