HL_9CPA_015

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9CPA|1|2|A|490, 9CPA|1|2|C|492, 9CPA|1|2|C|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_015 not in the Motif Atlas

Geometric match to HL_8CRE_202

Geometric discrepancy: 0.1451

The information below is about HL_8CRE_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9CPA|1|2|C|488
9CPA|1|2|G|489
9CPA|1|2|A|490
9CPA|1|2|C|491
9CPA|1|2|C|492
9CPA|1|2|C|493
9CPA|1|2|G|494

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain a

40S ribosomal protein S24