HL_9CPA_018

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

9CPA|1|2|G|610

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_018 not in the Motif Atlas

Geometric match to HL_8CRE_205

Geometric discrepancy: 0.1127

The information below is about HL_8CRE_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9CPA|1|2|C|608
9CPA|1|2|A|609
9CPA|1|2|G|610
9CPA|1|2|C|611
9CPA|1|2|C|612
9CPA|1|2|G|613

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

uS12