HL_9CPA_021

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9CPA|1|2|G|817, 9CPA|1|2|U|819

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_021 not in the Motif Atlas

Geometric match to HL_8CRE_207

Geometric discrepancy: 0.211

The information below is about HL_8CRE_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9CPA|1|2|U|816
9CPA|1|2|G|817
9CPA|1|2|U|818
9CPA|1|2|U|819
9CPA|1|2|C|820
9CPA|1|2|A|821
9CPA|1|2|A|822
9CPA|1|2|A|823
9CPA|1|2|G|824

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

Ribosomal protein S9 (Predicted)

Chain a

40S ribosomal protein S24