HL_9CPA_027

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

9CPA|1|2|U|1111, 9CPA|1|2|C|1112, 9CPA|1|2|C|1113, 9CPA|1|2|C|1114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|A|1109
9CPA|1|2|U|1110
9CPA|1|2|U|1111
9CPA|1|2|C|1112
9CPA|1|2|C|1113
9CPA|1|2|C|1114
9CPA|1|2|A|1115
9CPA|1|2|U|1116

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Eukaryotic translation initiation factor 3 subunit D

Chain c

40S ribosomal protein S27

Chain k

Eukaryotic translation initiation factor 3 subunit C

Chain x

Small ribosomal subunit protein eS1

Chain y

Eukaryotic translation initiation factor 3 subunit A