HL_9CPA_029

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_029 not in the Motif Atlas

Geometric match to HL_1Q96_001

Geometric discrepancy: 0.1633

The information below is about HL_1Q96_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9CPA|1|2|U|1174
9CPA|1|2|G|1175
9CPA|1|2|C|1176
9CPA|1|2|A|1177
9CPA|1|2|A|1178
9CPA|1|2|A|1179

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain l

eL41