HL_9CPA_030
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- GAC(I2T)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 9CPA|1|2|A|1249
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9CPA_030 not in the Motif Atlas
- Geometric match to HL_8CRE_216
- Geometric discrepancy: 0.1642
- The information below is about HL_8CRE_216
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9CPA|1|2|G|1241
9CPA|1|2|A|1242
9CPA|1|2|C|1243
9CPA|1|2|I2T|1244
9CPA|1|2|C|1245
9CPA|1|2|A|1246
9CPA|1|2|A|1247
9CPA|1|2|C|1248
9CPA|1|2|A|1249
9CPA|1|2|C|1250
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain S
- uS9
- Chain W
- uS10
- Chain f
- Ribosomal protein S27a
Coloring options: