HL_9CPA_032

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_032 not in the Motif Atlas

Geometric match to HL_4V9F_017

Geometric discrepancy: 0.1034

The information below is about HL_4V9F_017

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9CPA|1|2|A|1349
9CPA|1|2|G|1350
9CPA|1|2|C|1351
9CPA|1|2|G|1352
9CPA|1|2|A|1353
9CPA|1|2|U|1354

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

uS2 (SA)

Chain E

Small ribosomal subunit protein uS5