HL_9CPA_035

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CPA_035 not in the Motif Atlas

Geometric match to HL_8CRE_221

Geometric discrepancy: 0.1904

The information below is about HL_8CRE_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

9CPA|1|2|C|1456
9CPA|1|2|G|1457
9CPA|1|2|U|1458
9CPA|1|2|U|1459
9CPA|1|2|C|1460
9CPA|1|2|A|1461
9CPA|1|2|G|1462

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Eukaryotic translation initiation factor 3 subunit D

Chain T

eS17