HL_9CXF_001

3D structure

PDB id

9CXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Rail RNA motif

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CAGUCGCAG

Length

9 nucleotides

Bulged bases

9CXF|1|A|A|33

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CXF_001 not in the Motif Atlas

Geometric match to HL_2NZ4_007

Geometric discrepancy: 0.1927

The information below is about HL_2NZ4_007

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9CXF|1|A|C|32
9CXF|1|A|A|33
9CXF|1|A|G|34
9CXF|1|A|U|35
9CXF|1|A|C|36
9CXF|1|A|G|37
9CXF|1|A|C|38
9CXF|1|A|A|39
9CXF|1|A|G|40

Current chains

Chain A

RNA (200-MER)

Nearby chains