9CXF Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9CXF_001 | 1/A/32:40 | Pseudoknot geometry | geometric HL_2NZ4_007 NA | |
| HL_9CXF_003 | 1/A/110:116 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9CXF_002 | No text annotation | ||
| HL_9CXF_004 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9CXF_001 | 1/A/9:12, 1/A/195:196 | Multiple bulged bases | geometric IL_5XWP_001 IL_71421.5 | |
| IL_9CXF_002 | 1/A/14:15, 1/A/189:193 | No text annotation | ||
| IL_9CXF_003 | 1/A/27:30, 1/A/42:47 | No text annotation | ||
| IL_9CXF_004 | 1/A/83:101, 1/A/169:181 | No text annotation | ||
| IL_9CXF_005 | 1/A/101:103, 1/A/168:169 | No text annotation | ||
| IL_9CXF_006 | 1/A/120:122, 1/A/161:162 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_9CXF_007 | 1/A/122:131, 1/A/153:161 | No text annotation | ||
| IL_9CXF_008 | 1/A/132:137, 1/A/146:152 | 8x6 Sarcin-Ricin with bulged A; G-bulge | geometric IL_6CB3_003 IL_02349.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9CXF_001 | 1/A/107:108, 1/A/118:120, 1/A/162:164 | No text annotation | ||
| J4_9CXF_001 | 1/A/18:24, 1/A/50:59, 1/A/76:82, 1/A/182:186 | No text annotation |
Problematic loops
No problematic loops
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