HL_9D0G_197

3D structure

PDB id

9D0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

9D0G|1|2a|U|1136, 9D0G|1|2a|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D0G_197 not in the Motif Atlas

Geometric match to HL_8B0X_054

Geometric discrepancy: 0.3191

The information below is about HL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

9D0G|1|2a|G|1134
9D0G|1|2a|U|1135
9D0G|1|2a|U|1136
9D0G|1|2a|C|1137
9D0G|1|2a|G|1138
9D0G|1|2a|G|1139
9D0G|1|2a|C|1140

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains