HL_9D0I_060

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D0I_060 not in the Motif Atlas

Geometric match to HL_8B0X_089

Geometric discrepancy: 0.0591

The information below is about HL_8B0X_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9D0I|1|1A|C|2551
9D0I|1|1A|OMU|2552
9D0I|1|1A|G|2553
9D0I|1|1A|U|2554
9D0I|1|1A|U|2555
9D0I|1|1A|C|2556
9D0I|1|1A|G|2557

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1w

Transfer RNA; tRNA