HL_9D0I_119

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

9D0I|1|2A|G|386, 9D0I|1|2A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D0I_119 not in the Motif Atlas

Geometric match to HL_9DFE_012

Geometric discrepancy: 0.0819

The information below is about HL_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9D0I|1|2A|G|382
9D0I|1|2A|U|383
9D0I|1|2A|U|384
9D0I|1|2A|C|385
9D0I|1|2A|G|386
9D0I|1|2A|U|387
9D0I|1|2A|G|388
9D0I|1|2A|G|389
9D0I|1|2A|A|390
9D0I|1|2A|G|391
9D0I|1|2A|C|392

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15