HL_9D0I_150
3D structure
- PDB id
- 9D0I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- G(PSU)AAC(5MU)A(PSU)AA(OMC)
- Length
- 11 nucleotides
- Bulged bases
- 9D0I|1|2A|A|1913
- QA status
- Modified nucleotides: PSU, 5MU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D0I_150 not in the Motif Atlas
- Geometric match to HL_9DFE_046
- Geometric discrepancy: 0.1219
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9D0I|1|2A|G|1910
9D0I|1|2A|PSU|1911
9D0I|1|2A|A|1912
9D0I|1|2A|A|1913
9D0I|1|2A|C|1914
9D0I|1|2A|5MU|1915
9D0I|1|2A|A|1916
9D0I|1|2A|PSU|1917
9D0I|1|2A|A|1918
9D0I|1|2A|A|1919
9D0I|1|2A|OMC|1920
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2v
- MF-mRNA
- Chain 2w
- Transfer RNA; tRNA
- Chain 2x
- Transfer RNA; tRNA
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