HL_9D7R_203

3D structure

PDB id

9D7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Fva1 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

9D7R|1|2x|C|17, 9D7R|1|2x|G|18, 9D7R|1|2x|G|19, 9D7R|1|2x|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7R_203 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.1204

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7R|1|2x|C|13
9D7R|1|2x|A|14
9D7R|1|2x|G|15
9D7R|1|2x|U|16
9D7R|1|2x|C|17
9D7R|1|2x|G|18
9D7R|1|2x|G|19
9D7R|1|2x|U|20
9D7R|1|2x|A|21
9D7R|1|2x|G|22

Current chains

Chain 2x

P-site and E-site Deacylated tRNAphe

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2G

50S ribosomal protein L5