HL_9D7S_074
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 9D7S|1|1a|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D7S_074 not in the Motif Atlas
- Homologous match to HL_5J7L_006
- Geometric discrepancy: 0.1647
- The information below is about HL_5J7L_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9D7S|1|1a|G|259
9D7S|1|1a|G|260
9D7S|1|1a|U|261
9D7S|1|1a|A|262
9D7S|1|1a|A|263
9D7S|1|1a|U|264
9D7S|1|1a|G|265
9D7S|1|1a|G|266
9D7S|1|1a|C|267
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1q
- 30S ribosomal protein S17
- Chain 1t
- 30S ribosomal protein S20
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