HL_9D7S_101
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 9D7S|1|1x|C|17, 9D7S|1|1x|G|18, 9D7S|1|1x|G|19, 9D7S|1|1x|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D7S_101 not in the Motif Atlas
- Homologous match to HL_6PMO_003
- Geometric discrepancy: 0.1113
- The information below is about HL_6PMO_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9D7S|1|1x|C|13
9D7S|1|1x|A|14
9D7S|1|1x|G|15
9D7S|1|1x|U|16
9D7S|1|1x|C|17
9D7S|1|1x|G|18
9D7S|1|1x|G|19
9D7S|1|1x|U|20
9D7S|1|1x|A|21
9D7S|1|1x|G|22
Current chains
- Chain 1x
- P-site and E-site Deacylated tRNAphe
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 50S ribosomal protein L5
Coloring options: