HL_9D7S_105
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D7S_105 not in the Motif Atlas
- Homologous match to HL_6PMO_005
- Geometric discrepancy: 0.1782
- The information below is about HL_6PMO_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
9D7S|1|1y|G|53
9D7S|1|1y|5MU|54
9D7S|1|1y|PSU|55
9D7S|1|1y|C|56
9D7S|1|1y|G|57
9D7S|1|1y|A|58
9D7S|1|1y|U|59
9D7S|1|1y|U|60
9D7S|1|1y|C|61
Current chains
- Chain 1y
- P-site and E-site Deacylated tRNAphe
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: