HL_9D7S_149

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9D7S|1|2A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D7S_149 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0847

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9D7S|1|2A|G|1949
9D7S|1|2A|G|1950
9D7S|1|2A|U|1951
9D7S|1|2A|A|1952
9D7S|1|2A|A|1953
9D7S|1|2A|G|1954
9D7S|1|2A|U|1955
9D7S|1|2A|U|1956
9D7S|1|2A|C|1957

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

Peptide chain release factor 1