HL_9D7T_046
3D structure
- PDB id
- 9D7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- G(PSU)AAC(5MU)A(PSU)AA(OMC)
- Length
- 11 nucleotides
- Bulged bases
- 9D7T|1|1A|A|1913
- QA status
- Modified nucleotides: PSU, 5MU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D7T_046 not in the Motif Atlas
- Homologous match to HL_9DFE_046
- Geometric discrepancy: 0.2237
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9D7T|1|1A|G|1910
9D7T|1|1A|PSU|1911
9D7T|1|1A|A|1912
9D7T|1|1A|A|1913
9D7T|1|1A|C|1914
9D7T|1|1A|5MU|1915
9D7T|1|1A|A|1916
9D7T|1|1A|PSU|1917
9D7T|1|1A|A|1918
9D7T|1|1A|A|1919
9D7T|1|1A|OMC|1920
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1w
- Peptide chain release factor 1
- Chain 1x
- Transfer RNA; tRNA
Coloring options: