HL_9D7T_047
3D structure
- PDB id
- 9D7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUAAGUUC
- Length
- 9 nucleotides
- Bulged bases
- 9D7T|1|1A|U|1955
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D7T_047 not in the Motif Atlas
- Homologous match to HL_5J7L_182
- Geometric discrepancy: 0.0808
- The information below is about HL_5J7L_182
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20167.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9D7T|1|1A|G|1949
9D7T|1|1A|G|1950
9D7T|1|1A|U|1951
9D7T|1|1A|A|1952
9D7T|1|1A|A|1953
9D7T|1|1A|G|1954
9D7T|1|1A|U|1955
9D7T|1|1A|U|1956
9D7T|1|1A|C|1957
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1O
- 50S ribosomal protein L14
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1w
- Peptide chain release factor 1
Coloring options: