HL_9D7T_106
3D structure
- PDB id
- 9D7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UGGCUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D7T_106 not in the Motif Atlas
- Homologous match to HL_9DFE_001
- Geometric discrepancy: 0.0848
- The information below is about HL_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9D7T|1|2A|U|59
9D7T|1|2A|G|60
9D7T|1|2A|G|61
9D7T|1|2A|C|62
9D7T|1|2A|U|63
9D7T|1|2A|A|64
9D7T|1|2A|C|65
9D7T|1|2A|C|66
9D7T|1|2A|U|67
9D7T|1|2A|G|68
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 22
- 50S ribosomal protein L29
- Chain 27
- 50S ribosomal protein L34
- Chain 2X
- 50S ribosomal protein L23
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