HL_9D7T_204
3D structure
- PDB id
- 9D7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D7T_204 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.1109
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9D7T|1|2x|A|31
9D7T|1|2x|PSU|32
9D7T|1|2x|U|33
9D7T|1|2x|G|34
9D7T|1|2x|A|35
9D7T|1|2x|A|36
9D7T|1|2x|MIA|37
9D7T|1|2x|A|38
9D7T|1|2x|PSU|39
Current chains
- Chain 2x
- P-site and E-site Deacylated tRNAphe
Nearby chains
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2i
- 30S ribosomal protein S9
- Chain 2v
- PHE-Stop mRNA
- Chain 2w
- Peptide chain release factor 1
- Chain 2y
- Transfer RNA; tRNA
Coloring options: