HL_9D89_004

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

9D89|1|D|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_004 not in the Motif Atlas

Geometric match to HL_7KKV_002

Geometric discrepancy: 0.1047

The information below is about HL_7KKV_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9D89|1|D|U|137
9D89|1|D|U|138
9D89|1|D|U|139
9D89|1|D|C|140
9D89|1|D|G|141
9D89|1|D|A|142

Current chains

Chain D

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL23