9D89 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9D89_001 | 1/D/59:68 | Pseudoknot with intercalation | homologous HL_4WF9_067 HL_93438.2 | |
| HL_9D89_002 | 1/D/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_9D89_003 | 1/D/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_9D89_004 | 1/D/137:142 | UNCG | geometric HL_7KKV_002 HL_34617.5 | |
| HL_9D89_005 | 1/D/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_9D89_006 | 1/D/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_9D89_007 | 1/D/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_9D89_008 | 1/D/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_9D89_009 | 1/D/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_9D89_010 | 1/D/319:323 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_9D89_011 | 1/D/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_9D89_012 | 1/D/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_9D89_013 | 1/D/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_9D89_014 | 1/D/462:467 | GNRA | homologous HL_5J7L_147 HL_37824.7 | |
| HL_9D89_015 | 1/D/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_9D89_016 | 1/D/568:577 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.8 | |
| HL_9D89_017 | 1/D/613:619 | GNRA | geometric HL_4V9F_036 HL_37824.7 | |
| HL_9D89_018 | 1/D/631:636 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_9D89_019 | 1/D/643:649 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_9D89_020 | 1/D/714:721 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_9D89_021 | 1/D/746:755 | No text annotation | homologous HL_7A0S_022 HL_88205.2 | |
| HL_9D89_022 | 1/D/781:787 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_9D89_023 | 1/D/828:833 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_9D89_024 | 1/D/877:904 | No text annotation | ||
| HL_9D89_025 | 1/D/957:964 | GNRA | homologous HL_7A0S_026 HL_37824.7 | |
| HL_9D89_026 | 1/D/980:987 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
| HL_9D89_027 | 1/D/1045:1114 | No text annotation | ||
| HL_9D89_028 | 1/D/1224:1229 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
| HL_9D89_029 | 1/D/1283:1291 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
| HL_9D89_030 | 1/D/1326:1332 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_9D89_031 | 1/D/1365:1370 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_9D89_032 | 1/D/1391:1400 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_9D89_033 | 1/D/1453:1461 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_9D89_034 | 1/D/1494:1500 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_9D89_035 | 1/D/1535:1540 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_9D89_036 | 1/D/1567:1570 | Mini UNCG | homologous HL_9DFE_037 HL_48778.2 | |
| HL_9D89_037 | 1/D/1614:1621 | No text annotation | homologous HL_5J7L_173 HL_89567.2 | |
| HL_9D89_038 | 1/D/1632:1638 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_9D89_039 | 1/D/1693:1698 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_9D89_040 | 1/D/1729:1735 | No text annotation | homologous HL_5J7L_214 HL_08100.1 | |
| HL_9D89_041 | 1/D/1754:1758 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_9D89_042 | 1/D/1779:1789 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_9D89_043 | 1/D/1808:1813 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_9D89_044 | 1/D/1871:1876 | No text annotation | homologous HL_4WF9_045 NA | |
| HL_9D89_045 | 1/D/1914:1924 | No text annotation | homologous HL_9DFE_046 HL_25847.2 | |
| HL_9D89_046 | 1/D/1953:1961 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_9D89_047 | 1/D/2031:2040 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
| HL_9D89_048 | 1/D/2213:2219 | No text annotation | homologous HL_4WF9_048 HL_49922.4 | |
| HL_9D89_049 | 1/D/2252:2260 | No text annotation | homologous HL_5J7L_186 HL_85367.2 | |
| HL_9D89_050 | 1/D/2268:2280 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_9D89_051 | 1/D/2307:2317 | No text annotation | homologous HL_5J7L_188 NA | |
| HL_9D89_052 | 1/D/2328:2335 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_9D89_053 | 1/D/2360:2365 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_9D89_054 | 1/D/2378:2383 | GNRA | homologous HL_5J7L_191 HL_37824.7 | |
| HL_9D89_055 | 1/D/2408:2417 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_9D89_056 | 1/D/2475:2483 | No text annotation | homologous HL_9DFE_058 HL_32735.2 | |
| HL_9D89_057 | 1/D/2532:2539 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_9D89_058 | 1/D/2555:2561 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_9D89_059 | 1/D/2598:2603 | GNRA | homologous HL_5J7L_196 HL_37824.7 | |
| HL_9D89_060 | 1/D/2662:2667 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_9D89_061 | 1/D/2705:2710 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_9D89_062 | 1/D/2749:2763 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_9D89_063 | 1/D/2800:2803 | No text annotation | geometric HL_8VM8_002 HL_48778.2 | |
| HL_9D89_064 | 1/D/2823:2831 | No text annotation | homologous HL_9DFE_065 HL_64690.6 | |
| HL_9D89_065 | 1/D/2860:2865 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_9D89_066 | 1/E/34:48 | No text annotation | geometric HL_5J7L_215 HL_97756.2 | |
| HL_9D89_067 | 1/E/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_9D89_068 | 1/E/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9D89_001 | 1/D/24:30, 1/D/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
| IL_9D89_002 | 1/D/36:37, 1/D/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.6 | |
| IL_9D89_003 | 1/D/43:44, 1/D/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_9D89_004 | 1/D/81:85, 1/D/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_9D89_005 | 1/D/183:184, 1/D/212:214 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_9D89_006 | 1/D/188:194, 1/D/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_9D89_007 | 1/D/239:245, 1/D/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_9D89_008 | 1/D/269:271, 1/D/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_9D89_009 | 1/D/274:281, 1/D/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_9D89_010 | 1/D/293:295, 1/D/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_9D89_011 | 1/D/481:484, 1/D/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_9D89_012 | 1/D/536:539, 1/D/556:559 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_9D89_013 | 1/D/566:568, 1/D/577:579 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 IL_07785.1 | |
| IL_9D89_014 | 1/D/608:612, 1/D/620:624 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_9D89_015 | 1/D/674:676, 1/D/808:810 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_9D89_016 | 1/D/676:680, 1/D/801:808 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
| IL_9D89_017 | 1/D/699:700, 1/D/765:767 | Single bulged A | homologous IL_5J7L_261 IL_31462.6 | |
| IL_9D89_018 | 1/D/704:705, 1/D/730:732 | Single bulged G | homologous IL_5J7L_262 IL_00225.13 | |
| IL_9D89_019 | 1/D/705:709, 1/D/726:730 | Triple sheared | homologous IL_5J7L_263 IL_50730.2 | |
| IL_9D89_020 | 1/D/740:742, 1/D/759:760 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_9D89_021 | 1/D/777:779, 1/D/789:793 | No text annotation | geometric IL_8VTW_022 NA | |
| IL_9D89_022 | 1/D/839:840, 1/D/942:944 | Single stack bend | homologous IL_5J7L_266 IL_90729.1 | |
| IL_9D89_023 | 1/D/846:849, 1/D/935:936 | Other IL | geometric IL_5J7L_267 IL_90729.1 | |
| IL_9D89_024 | 1/D/846:850, 1/D/932:936 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_9D89_025 | 1/D/849:850, 1/D/932:935 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
| IL_9D89_026 | 1/D/852:853, 1/D/928:930 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_9D89_027 | 1/D/858:864, 1/D/917:923 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_9D89_028 | 1/D/864:865, 1/D/915:917 | Single bulged G | homologous IL_5J7L_271 IL_00225.13 | |
| IL_9D89_029 | 1/D/866:870, 1/D/911:914 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_9D89_030 | 1/D/872:874, 1/D/907:909 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_9D89_031 | 1/D/996:998, 1/D/1161:1162 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_9D89_032 | 1/D/1000:1004, 1/D/1155:1159 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_9D89_033 | 1/D/1006:1013, 1/D/1152:1153 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_9D89_034 | 1/D/1013:1015, 1/D/1151:1152 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_9D89_035 | 1/D/1020:1026, 1/D/1142:1146 | Kink-turn related | homologous IL_5J7L_280 IL_57188.5 | |
| IL_9D89_036 | 1/D/1026:1032, 1/D/1126:1142 | No text annotation | homologous IL_5J7L_281 IL_50715.3 | |
| IL_9D89_037 | 1/D/1033:1036, 1/D/1123:1125 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_9D89_038 | 1/D/1040:1043, 1/D/1116:1119 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_9D89_039 | 1/D/1198:1200, 1/D/1249:1252 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_9D89_040 | 1/D/1204:1208, 1/D/1242:1245 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_9D89_041 | 1/D/1210:1217, 1/D/1236:1240 | Kink-turn | homologous IL_9DFE_046 IL_70923.9 | |
| IL_9D89_042 | 1/D/1264:1271, 1/D/2015:2021 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_9D89_043 | 1/D/1312:1315, 1/D/1605:1606 | Major groove platform; stack outside cWW | geometric IL_5J7L_290 IL_50694.7 | |
| IL_9D89_044 | 1/D/1321:1325, 1/D/1333:1335 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_9D89_045 | 1/D/1353:1357, 1/D/1378:1382 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_9D89_046 | 1/D/1359:1363, 1/D/1372:1376 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_9D89_047 | 1/D/1417:1418, 1/D/1584:1589 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_9D89_048 | 1/D/1419:1423, 1/D/1579:1583 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_9D89_049 | 1/D/1434:1437, 1/D/1559:1563 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_9D89_050 | 1/D/1439:1442, 1/D/1553:1557 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_9D89_051 | 1/D/1452:1453, 1/D/1461:1463 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_9D89_052 | 1/D/1470:1473, 1/D/1522:1526 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_9D89_053 | 1/D/1476:1480, 1/D/1515:1519 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_9D89_054 | 1/D/1483:1484, 1/D/1509:1512 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_9D89_055 | 1/D/1491:1493, 1/D/1501:1502 | Single bulged A | homologous IL_5J7L_302 IL_31462.6 | |
| IL_9D89_056 | 1/D/1528:1531, 1/D/1544:1548 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_9D89_057 | 1/D/1653:1658, 1/D/2008:2010 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_9D89_058 | 1/D/1665:1667, 1/D/1999:2001 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_9D89_059 | 1/D/1668:1671, 1/D/1997:1998 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 IL_50694.7 | |
| IL_9D89_060 | 1/D/1668:1676, 1/D/1994:1998 | No text annotation | geometric IL_5J7L_386 IL_22854.4 | |
| IL_9D89_061 | 1/D/1671:1676, 1/D/1994:1997 | Intercalated tWH | homologous IL_5J7L_307 IL_76758.2 | |
| IL_9D89_062 | 1/D/1688:1693, 1/D/1698:1704 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_9D89_063 | 1/D/1714:1720, 1/D/1744:1748 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_9D89_064 | 1/D/1722:1726, 1/D/1738:1742 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_9D89_065 | 1/D/1772:1773, 1/D/1984:1986 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
| IL_9D89_066 | 1/D/1800:1806, 1/D/1815:1823 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_9D89_067 | 1/D/1839:1842, 1/D/1906:1907 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_9D89_068 | 1/D/1843:1844, 1/D/1902:1905 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_9D89_069 | 1/D/1848:1851, 1/D/1897:1898 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_9D89_070 | 1/D/1853:1862, 1/D/1886:1895 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_9D89_071 | 1/D/1866:1869, 1/D/1878:1882 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_9D89_072 | 1/D/1937:1938, 1/D/1968:1971 | No text annotation | geometric IL_8VTW_075 NA | |
| IL_9D89_073 | 1/D/1938:1949, 1/D/1965:1968 | No text annotation | homologous IL_5J7L_319 IL_42218.2 | |
| IL_9D89_074 | 1/D/2054:2056, 1/D/2621:2622 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_9D89_075 | 1/D/2058:2060, 1/D/2616:2619 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_9D89_076 | 1/D/2071:2073, 1/D/2446:2447 | Single bulged U | homologous IL_5J7L_388 IL_89505.4 | |
| IL_9D89_077 | 1/D/2074:2075, 1/D/2442:2445 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_9D89_078 | 1/D/2085:2087, 1/D/2240:2243 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_9D89_079 | 1/D/2089:2091, 1/D/2236:2238 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_9D89_080 | 1/D/2206:2208, 1/D/2224:2225 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_9D89_081 | 1/D/2301:2303, 1/D/2321:2325 | No text annotation | geometric IL_5J7L_332 IL_61476.2 | |
| IL_9D89_082 | 1/D/2354:2357, 1/D/2368:2371 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_9D89_083 | 1/D/2405:2407, 1/D/2418:2419 | Single bulged U | homologous IL_5J7L_334 IL_89505.4 | |
| IL_9D89_084 | 1/D/2457:2458, 1/D/2502:2504 | Single stack bend | homologous IL_5J7L_391 IL_26793.1 | |
| IL_9D89_085 | 1/D/2458:2459, 1/D/2500:2502 | Major groove platform | homologous IL_5J7L_392 IL_48076.6 | |
| IL_9D89_086 | 1/D/2461:2463, 1/D/2497:2498 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_9D89_087 | 1/D/2463:2465, 1/D/2493:2497 | Major groove minor groove platform with extra cWW | homologous IL_4WF9_092 IL_51387.2 | |
| IL_9D89_088 | 1/D/2470:2474, 1/D/2484:2488 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_9D89_089 | 1/D/2511:2512, 1/D/2584:2586 | No text annotation | homologous IL_9DFE_096 IL_07039.3 | |
| IL_9D89_090 | 1/D/2514:2516, 1/D/2578:2582 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_9D89_091 | 1/D/2516:2517, 1/D/2575:2578 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_9D89_092 | 1/D/2526:2527, 1/D/2544:2547 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_9D89_093 | 1/D/2595:2596, 1/D/2605:2607 | No text annotation | ||
| IL_9D89_094 | 1/D/2640:2644, 1/D/2778:2786 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_9D89_095 | 1/D/2656:2662, 1/D/2667:2672 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_9D89_096 | 1/D/2684:2688, 1/D/2729:2731 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_9D89_097 | 1/D/2691:2695, 1/D/2722:2726 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_9D89_098 | 1/D/2699:2700, 1/D/2715:2718 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_9D89_099 | 1/D/2741:2746, 1/D/2766:2771 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_9D89_100 | 1/D/2799:2800, 1/D/2803:2805 | Single bulged A | geometric IL_8VTW_018 NA | |
| IL_9D89_101 | 1/D/2810:2815, 1/D/2893:2896 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_9D89_102 | 1/D/2842:2843, 1/D/2882:2884 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_9D89_103 | 1/D/2847:2850, 1/D/2874:2878 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_9D89_104 | 1/D/2851:2856, 1/D/2869:2873 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_9D89_105 | 1/E/17:18, 1/E/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.6 | |
| IL_9D89_106 | 1/E/23:28, 1/E/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_9D89_107 | 1/E/30:31, 1/E/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_9D89_108 | 1/E/34:38, 1/E/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_9D89_109 | 1/E/71:79, 1/E/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9D89_001 | 1/D/30:31, 1/D/474:481, 1/D/509:510 | No text annotation | geometric J3_5J7L_036 J3_60031.2 | |
| J3_9D89_002 | 1/D/30:31, 1/D/474:484, 1/D/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_9D89_003 | 1/D/32:35, 1/D/445:461, 1/D/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_9D89_004 | 1/D/56:57, 1/D/70:76, 1/D/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_9D89_005 | 1/D/297:301, 1/D/316:325, 1/D/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_9D89_006 | 1/D/685:691, 1/D/775:777, 1/D/793:796 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_9D89_007 | 1/D/700:702, 1/D/734:738, 1/D/762:765 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
| J3_9D89_008 | 1/D/1300:1305, 1/D/1627:1629, 1/D/1641:1644 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_9D89_009 | 1/D/1308:1311, 1/D/1607:1613, 1/D/1622:1624 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_9D89_010 | 1/D/1346:1351, 1/D/1384:1387, 1/D/1404:1405 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_9D89_011 | 1/D/1426:1431, 1/D/1566:1567, 1/D/1570:1576 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_9D89_012 | 1/D/2095:2097, 1/D/2200:2204, 1/D/2227:2232 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_9D89_013 | 1/D/2286:2288, 1/D/2388:2399, 1/D/2425:2431 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_9D89_014 | 1/D/2299:2301, 1/D/2325:2327, 1/D/2336:2341 | No text annotation | geometric J3_5J7L_045 J3_61124.2 | |
| J3_9D89_015 | 1/D/2299:2303, 1/D/2321:2327, 1/D/2336:2341 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_9D89_016 | 1/D/2521:2524, 1/D/2549:2551, 1/D/2565:2571 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_9D89_017 | 1/D/2793:2795, 1/D/2809:2810, 1/D/2896:2898 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_9D89_018 | 1/D/2816:2819, 1/D/2835:2840, 1/D/2886:2892 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_9D89_019 | 1/E/10:16, 1/E/68:70, 1/E/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J4_9D89_001 | 1/D/268:269, 1/D/370:375, 1/D/399:406, 1/D/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_9D89_002 | 1/D/297:301, 1/D/316:319, 1/D/323:325, 1/D/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_9D89_003 | 1/D/603:606, 1/D/626:630, 1/D/637:640, 1/D/652:658 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_9D89_004 | 1/D/1272:1278, 1/D/1296:1297, 1/D/1647:1650, 1/D/2013:2014 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_9D89_005 | 1/D/1312:1316, 1/D/1340:1345, 1/D/1406:1407, 1/D/1599:1606 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_9D89_006 | 1/D/1315:1316, 1/D/1340:1345, 1/D/1406:1407, 1/D/1599:1605 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_9D89_007 | 1/D/1446:1447, 1/D/1468:1469, 1/D/1527:1528, 1/D/1548:1549 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_9D89_008 | 1/D/1774:1778, 1/D/1790:1794, 1/D/1829:1832, 1/D/1979:1983 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_9D89_009 | 1/D/1835:1837, 1/D/1909:1910, 1/D/1928:1937, 1/D/1971:1976 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_9D89_010 | 1/D/2289:2293, 1/D/2347:2351, 1/D/2374:2376, 1/D/2385:2387 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_9D89_011 | 1/D/2647:2650, 1/D/2678:2680, 1/D/2735:2739, 1/D/2773:2775 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_9D89_001 | 1/D/47:54, 1/D/116:121, 1/D/130:131, 1/D/148:150, 1/D/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_9D89_002 | 1/D/531:533, 1/D/562:566, 1/D/579:581, 1/D/1263:1264, 1/D/2021:2022 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_9D89_003 | 1/D/586:591, 1/D/670:673, 1/D/811:814, 1/D/1197:1198, 1/D/1252:1258 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_9D89_004 | 1/D/1676:1684, 1/D/1708:1709, 1/D/1753:1754, 1/D/1758:1766, 1/D/1992:1994 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_9D89_005 | 1/D/2061:2068, 1/D/2450:2457, 1/D/2504:2511, 1/D/2586:2592, 1/D/2610:2615 | No text annotation | ||
| J5_9D89_006 | 1/D/2078:2081, 1/D/2247:2250, 1/D/2262:2263, 1/D/2285:2286, 1/D/2431:2439 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_9D89_001 | 1/D/45:46, 1/D/179:183, 1/D/214:224, 1/D/231:235, 1/D/262:266, 1/D/426:433 | No text annotation | ||
| J6_9D89_002 | 1/D/2078:2081, 1/D/2247:2250, 1/D/2262:2263, 1/D/2285:2288, 1/D/2388:2399, 1/D/2425:2439 | No text annotation | ||
| J7_9D89_001 | 1/D/8:15, 1/D/525:531, 1/D/2022:2027, 1/D/2044:2047, 1/D/2629:2634, 1/D/2792:2793, 1/D/2898:2899 | No text annotation | ||
| J7_9D89_002 | 1/D/819:824, 1/D/837:839, 1/D/944:948, 1/D/973:978, 1/D/989:993, 1/D/1165:1166, 1/D/1187:1192 | No text annotation |
Problematic loops
No problematic loops
Coloring options: