HL_9D89_008
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D89_008 not in the Motif Atlas
- Homologous match to HL_5J7L_141
- Geometric discrepancy: 0.0495
- The information below is about HL_5J7L_141
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37369.2
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9D89|1|D|C|246
9D89|1|D|G|247
9D89|1|D|G|248
9D89|1|D|C|249
9D89|1|D|G|250
9D89|1|D|A|251
9D89|1|D|G|252
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L28
Coloring options: