HL_9D89_009

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9D89|1|D|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0848

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

9D89|1|D|C|305
9D89|1|D|U|306
9D89|1|D|G|307
9D89|1|D|G|308
9D89|1|D|A|309
9D89|1|D|A|310
9D89|1|D|A|311
9D89|1|D|G|312

Current chains

Chain D

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24