HL_9D89_017

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9D89|1|D|U|617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_017 not in the Motif Atlas

Geometric match to HL_4V9F_036

Geometric discrepancy: 0.2408

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9D89|1|D|C|613
9D89|1|D|G|614
9D89|1|D|A|615
9D89|1|D|A|616
9D89|1|D|U|617
9D89|1|D|A|618
9D89|1|D|G|619

Current chains

Chain D

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L4