HL_9D89_023

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

9D89|1|D|U|829, 9D89|1|D|G|832

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_023 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.0572

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

9D89|1|D|U|828
9D89|1|D|U|829
9D89|1|D|U|830
9D89|1|D|A|831
9D89|1|D|G|832
9D89|1|D|G|833

Current chains

Chain D

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L15