HL_9D89_025

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

9D89|1|D|U|960, 9D89|1|D|C|963

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_025 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1706

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9D89|1|D|PSU|957
9D89|1|D|G|958
9D89|1|D|C|959
9D89|1|D|U|960
9D89|1|D|A|961
9D89|1|D|A|962
9D89|1|D|C|963
9D89|1|D|G|964

Current chains

Chain D

23S rRNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16