HL_9D89_026

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_026 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.0686

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9D89|1|D|G|980
9D89|1|D|A|981
9D89|1|D|A|982
9D89|1|D|A|983
9D89|1|D|C|984
9D89|1|D|A|985
9D89|1|D|A|986
9D89|1|D|C|987

Current chains

Chain D

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain q

50S ribosomal protein L21

Chain y

50S ribosomal protein L30