HL_9D89_027

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CCCAGACAGCGUCGAG

Length

16 nucleotides

Bulged bases

9D89|1|D|A|1048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D89|1|D|C|1045
9D89|1|D|C|1046
9D89|1|D|C|1047
9D89|1|D|A|1048
9D89|1|D|G|1049
9D89|1|D|A|1050
9D89|1|D|C|1051
9D89|1|D|A|1052
9D89|1|D|G|1053
9D89|1|D|C|1054
9D89|1|D|G|1109
9D89|1|D|U|1110
9D89|1|D|C|1111
9D89|1|D|G|1112
9D89|1|D|A|1113
9D89|1|D|G|1114

Current chains

Chain D

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L36

Chain g

Large ribosomal subunit protein uL6