HL_9D89_032

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9D89|1|D|U|1398, 9D89|1|D|U|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_032 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0666

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9D89|1|D|G|1391
9D89|1|D|U|1392
9D89|1|D|U|1393
9D89|1|D|A|1394
9D89|1|D|A|1395
9D89|1|D|U|1396
9D89|1|D|A|1397
9D89|1|D|U|1398
9D89|1|D|U|1399
9D89|1|D|C|1400

Current chains

Chain D

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL23