HL_9D89_034
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GCAAAUC
- Length
- 7 nucleotides
- Bulged bases
- 9D89|1|D|C|1495, 9D89|1|D|U|1499
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D89_034 not in the Motif Atlas
- Homologous match to HL_5J7L_170
- Geometric discrepancy: 0.0793
- The information below is about HL_5J7L_170
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_57176.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9D89|1|D|G|1494
9D89|1|D|C|1495
9D89|1|D|A|1496
9D89|1|D|A|1497
9D89|1|D|A|1498
9D89|1|D|U|1499
9D89|1|D|C|1500
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L2
Coloring options: