HL_9D89_035

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9D89|1|D|A|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_035 not in the Motif Atlas

Homologous match to HL_5J7L_171

Geometric discrepancy: 0.2865

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9D89|1|D|C|1535
9D89|1|D|U|1536
9D89|1|D|A|1537
9D89|1|D|C|1538
9D89|1|D|G|1539
9D89|1|D|G|1540

Current chains

Chain D

23S rRNA

Nearby chains