3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
CAGG
Length
4 nucleotides
Bulged bases
9D89|1|D|A|1568
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9D89_036 not in the Motif Atlas
Homologous match to HL_9DFE_037
Geometric discrepancy: 0.0608
The information below is about HL_9DFE_037
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_90436.1
Basepair signature
cWW-F
Number of instances in this motif group
37

Unit IDs

9D89|1|D|C|1567
9D89|1|D|A|1568
9D89|1|D|G|1569
9D89|1|D|G|1570

Current chains

Chain D
23S rRNA

Nearby chains

Chain F
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1214 s