HL_9D89_037

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

9D89|1|D|A|1616, 9D89|1|D|A|1618, 9D89|1|D|6MZ|1620

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_037 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0558

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9D89|1|D|C|1614
9D89|1|D|G|1615
9D89|1|D|A|1616
9D89|1|D|C|1617
9D89|1|D|A|1618
9D89|1|D|C|1619
9D89|1|D|6MZ|1620
9D89|1|D|G|1621

Current chains

Chain D

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain T

Rumicidin-2 (12-27)

Chain r

50S ribosomal protein L22