HL_9D89_039

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9D89|1|D|U|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_039 not in the Motif Atlas

Homologous match to HL_5J7L_175

Geometric discrepancy: 0.0462

The information below is about HL_5J7L_175

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9D89|1|D|C|1693
9D89|1|D|U|1694
9D89|1|D|U|1695
9D89|1|D|C|1696
9D89|1|D|G|1697
9D89|1|D|G|1698

Current chains

Chain D

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L2