HL_9D89_040

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

9D89|1|D|U|1731, 9D89|1|D|C|1734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_040 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.4105

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9D89|1|D|C|1729
9D89|1|D|C|1730
9D89|1|D|U|1731
9D89|1|D|C|1732
9D89|1|D|G|1733
9D89|1|D|C|1734
9D89|1|D|G|1735

Current chains

Chain D

23S rRNA

Nearby chains