HL_9D89_047

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

9D89|1|D|6MZ|2034, 9D89|1|D|A|2035, 9D89|1|D|G|2036

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_047 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0624

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

9D89|1|D|G|2031
9D89|1|D|U|2032
9D89|1|D|G|2033
9D89|1|D|6MZ|2034
9D89|1|D|A|2035
9D89|1|D|G|2036
9D89|1|D|A|2037
9D89|1|D|U|2038
9D89|1|D|G|2039
9D89|1|D|C|2040

Current chains

Chain D

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L3

Chain M

50S ribosomal protein L32

Chain q

50S ribosomal protein L21