HL_9D89_048
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GUGAUCC
- Length
- 7 nucleotides
- Bulged bases
- 9D89|1|D|G|2215, 9D89|1|D|U|2217
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9D89_048 not in the Motif Atlas
- Homologous match to HL_4WF9_048
- Geometric discrepancy: 0.4411
- The information below is about HL_4WF9_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81964.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9D89|1|D|G|2213
9D89|1|D|U|2214
9D89|1|D|G|2215
9D89|1|D|A|2216
9D89|1|D|U|2217
9D89|1|D|C|2218
9D89|1|D|C|2219
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L2
Coloring options: