3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
GUGAUCC
Length
7 nucleotides
Bulged bases
9D89|1|D|G|2215, 9D89|1|D|U|2217
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9D89_048 not in the Motif Atlas
Homologous match to HL_4WF9_048
Geometric discrepancy: 0.4411
The information below is about HL_4WF9_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81964.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
5

Unit IDs

9D89|1|D|G|2213
9D89|1|D|U|2214
9D89|1|D|G|2215
9D89|1|D|A|2216
9D89|1|D|U|2217
9D89|1|D|C|2218
9D89|1|D|C|2219

Current chains

Chain D
23S rRNA

Nearby chains

Chain F
50S ribosomal protein L2

Coloring options:


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