HL_9D89_049

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9D89|1|D|G|2254

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_049 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0741

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9D89|1|D|C|2252
9D89|1|D|U|2253
9D89|1|D|G|2254
9D89|1|D|OMG|2255
9D89|1|D|G|2256
9D89|1|D|G|2257
9D89|1|D|C|2258
9D89|1|D|G|2259
9D89|1|D|G|2260

Current chains

Chain D

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L27

Chain l

50S ribosomal protein L16