HL_9D89_064

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9D89|1|D|A|2824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9D89_064 not in the Motif Atlas

Homologous match to HL_9DFE_065

Geometric discrepancy: 0.1606

The information below is about HL_9DFE_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9D89|1|D|G|2823
9D89|1|D|A|2824
9D89|1|D|A|2825
9D89|1|D|G|2826
9D89|1|D|A|2827
9D89|1|D|C|2828
9D89|1|D|G|2829
9D89|1|D|A|2830
9D89|1|D|C|2831

Current chains

Chain D

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L3

Chain J

50S ribosomal protein L17