HL_9DFC_043
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9DFC|1|1A|A|1780, 9DFC|1|1A|C|1781, 9DFC|1|1A|C|1782, 9DFC|1|1A|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9DFC_043 not in the Motif Atlas
- Homologous match to HL_9DFE_043
- Geometric discrepancy: 0.0558
- The information below is about HL_9DFE_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
9DFC|1|1A|U|1777
9DFC|1|1A|U|1778
9DFC|1|1A|U|1779
9DFC|1|1A|A|1780
9DFC|1|1A|C|1781
9DFC|1|1A|C|1782
9DFC|1|1A|A|1783
9DFC|1|1A|A|1784
9DFC|1|1A|A|1785
9DFC|1|1A|A|1786
9DFC|1|1A|A|1787
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1D
- 50S ribosomal protein L2
- Chain 1W
- 50S ribosomal protein L22
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