HL_9DFE_043

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

9DFE|1|1A|A|1780, 9DFE|1|1A|C|1781, 9DFE|1|1A|C|1782, 9DFE|1|1A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

9DFE|1|1A|U|1777
9DFE|1|1A|U|1778
9DFE|1|1A|U|1779
9DFE|1|1A|A|1780
9DFE|1|1A|C|1781
9DFE|1|1A|C|1782
9DFE|1|1A|A|1783
9DFE|1|1A|A|1784
9DFE|1|1A|A|1785
9DFE|1|1A|A|1786
9DFE|1|1A|A|1787

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2

Chain 1W

50S ribosomal protein L22