3D structure

PDB id
9DFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CAGCCUGGUAG
Length
11 nucleotides
Bulged bases
9DFC|1|1x|G|18, 9DFC|1|1x|G|19, 9DFC|1|1x|U|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_93616.2
Basepair signature
cWW-cWS-F-F-F-F
Number of instances in this motif group
8

Unit IDs

9DFC|1|1x|C|13
9DFC|1|1x|A|14
9DFC|1|1x|G|15
9DFC|1|1x|C|16
9DFC|1|1x|C|17
9DFC|1|1x|U|17|||A
9DFC|1|1x|G|18
9DFC|1|1x|G|19
9DFC|1|1x|U|20
9DFC|1|1x|A|21
9DFC|1|1x|G|22

Current chains

Chain 1x
P-site Aminoacylated fMet-tRNAmet

Nearby chains

Chain 1A
Large subunit ribosomal RNA; LSU rRNA
Chain 1G
50S ribosomal protein L5

Coloring options:

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