HL_9DFC_123

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

9DFC|1|2A|C|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9DFC_123 not in the Motif Atlas

Homologous match to HL_9DFE_016

Geometric discrepancy: 0.0752

The information below is about HL_9DFE_016

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9DFC|1|2A|U|566
9DFC|1|2A|A|567
9DFC|1|2A|U|568
9DFC|1|2A|U|569
9DFC|1|2A|G|570
9DFC|1|2A|A|571
9DFC|1|2A|A|572
9DFC|1|2A|G|573
9DFC|1|2A|C|574
9DFC|1|2A|A|575

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2P

50S ribosomal protein L15

Chain 2V

50S ribosomal protein L21